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Cheap Flights from Tokyo (TYOA) to El Nido (ENI)

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Compare Tokyo to El Nido flight deals

Find the cheapest month or even day of the year to fly to El Nido

Book the best El Nido fare with no extra fees

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Flight deals from Tokyo to El Nido

Looking for a cheap last-minute deal or the best return flight from Tokyo to El Nido? Find the lowest prices on one-way and return tickets right here.
El Nido.£227 per passenger.Departing Wed, 9 Jul, returning Wed, 16 Jul.Return flight with Philippines AirAsia and Air Swift.Outbound indirect flight with Philippines AirAsia, departs from Tokyo Narita on Wed, 9 Jul, arriving in El Nido.Inbound indirect flight with Air Swift, departs from El Nido on Wed, 16 Jul, arriving in Tokyo Narita.Price includes taxes and charges.From £227, select.
Wed, 9 JulNRT - ENI with Philippines AirAsia
1 stop
Wed, 16 JulENI - NRT with Air Swift
1 stop
from £227
El Nido.£249 per passenger.Departing Thu, 21 Aug, returning Sat, 30 Aug.Return flight with Philippines AirAsia and Air Swift.Outbound indirect flight with Philippines AirAsia, departs from Tokyo Narita on Thu, 21 Aug, arriving in El Nido.Inbound indirect flight with Air Swift, departs from El Nido on Sat, 30 Aug, arriving in Tokyo Narita.Price includes taxes and charges.From £249, select.
Thu, 21 AugNRT - ENI with Philippines AirAsia
1 stop
Sat, 30 AugENI - NRT with Air Swift
1 stop
from £249
El Nido.£258 per passenger.Departing Fri, 12 Sep, returning Mon, 15 Sep.Return flight with Philippines AirAsia and Cebgo.Outbound indirect flight with Philippines AirAsia, departs from Tokyo Narita on Fri, 12 Sep, arriving in El Nido.Inbound indirect flight with Cebgo, departs from El Nido on Mon, 15 Sep, arriving in Tokyo Narita.Price includes taxes and charges.From £258, select.
Fri, 12 SepNRT - ENI with Philippines AirAsia
1 stop
Mon, 15 SepENI - NRT with Cebgo
1 stop
from £258
El Nido.£259 per passenger.Departing Sat, 15 Nov, returning Sat, 22 Nov.Return flight with Philippines AirAsia and Air Swift.Outbound indirect flight with Philippines AirAsia, departs from Tokyo Narita on Sat, 15 Nov, arriving in El Nido.Inbound indirect flight with Air Swift, departs from El Nido on Sat, 22 Nov, arriving in Tokyo Narita.Price includes taxes and charges.From £259, select.
Sat, 15 NovNRT - ENI with Philippines AirAsia
1 stop
Sat, 22 NovENI - NRT with Air Swift
1 stop
from £259
El Nido.£268 per passenger.Departing Sun, 29 Jun, returning Sun, 6 Jul.Return flight with Philippines AirAsia and Air Swift.Outbound indirect flight with Philippines AirAsia, departs from Tokyo Narita on Sun, 29 Jun, arriving in El Nido.Inbound indirect flight with Air Swift, departs from El Nido on Sun, 6 Jul, arriving in Tokyo Narita.Price includes taxes and charges.From £268, select.
Sun, 29 JunNRT - ENI with Philippines AirAsia
1 stop
Sun, 6 JulENI - NRT with Air Swift
1 stop
from £268
El Nido.£279 per passenger.Departing Wed, 18 Jun, returning Wed, 25 Jun.Return flight with Philippines AirAsia and Air Swift.Outbound indirect flight with Philippines AirAsia, departs from Tokyo Narita on Wed, 18 Jun, arriving in El Nido.Inbound indirect flight with Air Swift, departs from El Nido on Wed, 25 Jun, arriving in Tokyo Narita.Price includes taxes and charges.From £279, select.
Wed, 18 JunNRT - ENI with Philippines AirAsia
1 stop
Wed, 25 JunENI - NRT with Air Swift
1 stop
from £279
El Nido.£416 per passenger.Departing Thu, 29 May, returning Thu, 5 Jun.Return flight with Zipair and Air Swift.Outbound indirect flight with Zipair, departs from Tokyo Narita on Thu, 29 May, arriving in El Nido.Inbound indirect flight with Air Swift, departs from El Nido on Thu, 5 Jun, arriving in Tokyo Narita.Price includes taxes and charges.From £416, select.
Thu, 29 MayNRT - ENI with Zipair
1 stop
Thu, 5 JunENI - NRT with Air Swift
1 stop
from £416
How did we find these deals? The deals you see here are the lowest prices for flight tickets from Tokyo to El Nido found in the last 4 days, and are subject to change and availability.

Find the cheapest month to fly from Tokyo to El Nido

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Tokyo to El Nido flights are currently cheapest in July.
May
Find prices
Jun
from £279
Jul
from £227
Aug
from £249
Sep
from £258
Oct
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Nov
from £259
Dec
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Jan
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Feb
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Mar
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Apr
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Tokyo to El Nido: Alternative routes

Compare routes from Tokyo to El Nido below. You may find an airport to fly into that's cheaper, faster, or easier than El Nido.

Tokyo to El Nido: Flight information

The things to know before you go.
Cheapest flight found£227
Cheapest month to flyJuly

Finding cheap flights from Tokyo to El Nido: Frequently asked questions

The best price we found for a return flight from Tokyo to El Nido is £227. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
Currently, there are no airlines that fly direct from Tokyo to El Nido. But we found flights with one stop from £227.
As of May 2025, there are no flights flying from Tokyo to El Nido.
The cheapest month to fly from Tokyo to El Nido is usually May 2025.
After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from Tokyo to El Nido Airport on Wednesday, 9 July 2025.
No airlines currently offer direct flights between Tokyo and El Nido Airport. Most routes have one or more stops.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to El Nido but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to El Nido is around 40 days in advance, so don’t leave your flight to the last minute.
The cheapest airline that flies to El Nido is Philippines AirAsia .

Flying from Tokyo to El Nido Airport (ENI): what you need to know

  • There are two main airports you can fly out of in Tokyo. Explore your options leaving from Haneda Airport (HND) or Narita International Airport (NRT) when searching for a flight from Tokyo to El Nido Airport (ENI).

  • El Nido Airport is located in El Nido. The city operates in the UTC+8 timezone and is 1 hour behind Tokyo.

  • For a smooth journey, turn up at the airport two hours ahead of international flights and an hour before domestic departures. This way, you can comfortably board your flight from Tokyo to ENI.

  • Flying over a peak time such as June? Major public holidays and other popular seasons can lead to longer lines and delays at check-in and security. Be extra cautious and get there up to four hours ahead of international flights and two hours before a domestic departure.

Airports in Tokyo

Haneda Airport (HND)

  • HND is around 10 miles from the centre of Tokyo. To work out how to get there, use Google Maps. This essential traveller tool will give you the fastest route and available public transport options.

  • Want a leisurely start to your travels? Stay near Haneda Airport. Whether you're catching an early flight from Tokyo to El Nido Airport or just don't want to be rushed, these hotels have you covered:

    • HISAYO'S INN

    • Kawasaki King Skyfront Tokyu REI Hotel

    • アンドステイ羽田4丁目

Narita International Airport (NRT)

  • Driving from central Tokyo to NRT typically takes 58 minutes, depending on traffic. It's roughly 40 miles from the city centre to the airport.

  • Want to treat yourself to an extra night away before boarding your flight from Tokyo to ENI? Relax in a hotel near Narita International Airport before your holiday officially starts. Stay at one of these accommodation options:

    • Toyoko Inn Narita Airport Shinkan

    • Marroad International Hotel Narita

    • Narita AIC Airport Hotel

About El Nido Airport (ENI)

  • If you're arriving on a late flight from Tokyo to El Nido Airport, few things top the convenience of staying close to the terminal. Grab your bags from the carousel and then be showered and relaxing soon after at one of these options near ENI:

    • Carabao Lodge - 2 Bedroom house, Stargazing & Pool

    • OIA Beach Hostel - El Nido

    • Villarosa

Getting from El Nido Airport (ENI) to central El Nido

  • From El Nido Airport, El Nido is approximately 1 mile away. It takes around 3 minutes to reach the centre driving.

  • If you're travelling by public transport, expect a journey of about 15 minutes.

How to find the cheapest flights from Tokyo to El Nido Airport (ENI)

  • For a one-way ticket from Tokyo to El Nido Airport, £81 is the cheapest price. You can also book a return flight from just £227. These are currently the lowest fares but could change depending on availability.

  • To score cheap tickets from Tokyo to ENI, book as early as possible. Airlines generally offer their most competitively priced fares when flights are first made available.

  • Getting cheap tickets from Tokyo to El Nido Airport is more likely if you're flexible with your trip dates. Check out the 'Whole month' tool to see the best prices throughout the month and bag a great deal.

  • Snapping up a cheap ticket from Tokyo to ENI is a piece of cake with Price Alerts. Simply set up one of these automatic alerts and we'll get in touch as soon as the price drops.

  • Use the filters to tailor your flights from Tokyo to El Nido Airport. Select your preferred arrival and departure times, airlines and number of stops. You can also sort your results by 'Cheapest' to get the best deals.

The best time to fly from Tokyo to El Nido Airport (ENI)

  • It's time to plan your travel dates for your flight from Tokyo to El Nido Airport. May is the busiest month to travel to El Nido. If you like a more relaxed atmosphere, go in February.

  • Before locking in your flight from Tokyo to ENI, think about the type of weather you enjoy. May is the warmest month in El Nido, with temperatures ranging from 26ºC to 30ºC.

  • Look for cheap flights from Tokyo to El Nido Airport in February if you like cooler conditions. Temperatures are at their lowest then, ranging between 25ºC and 29ºC on average.

More about El Nido

  • When it comes to looking for somewhere to lay your head, you'll find the top stays in El Nido right here. Check out these options as soon as you've locked in your flight from Tokyo to El Nido Airport:

    • Carabao Lodge - 2 Bedroom house, Stargazing & Pool

    • EL NIDO, Lugadia, Concrete House With Small Garden

    • OIA Beach Hostel - El Nido

  • One of the best ways to get a feel for El Nido is to visit its top sights. Essential stops include Big Lagoon, Secret Lagoon and Nacpan Beach.

Complete your El Nido trip with a car rental

  • Finding you a cheap flight from Tokyo to El Nido Airport isn't our only cool trick. Browse our car rentals in El Nido and explore on your own terms. We find deals from trusted car rental companies and put them all in one place. You can instantly compare offers and then book with no fees.

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Plan the rest of your trip from Tokyo to El Nido

  • Car hire from El Nido
  • Hotels in El Nido

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.

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